PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C026896P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 405aa MW: 43835.9 Da PI: 8.9154

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C026896P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.6e-34	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFveav+qLGG++kAtPkt++++m+++gLtl+h+kSHLQkYRl MELO3C026896P2 40 KPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.267	37	97	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-31	38	95	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.78E-17	39	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	40	95	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-9	42	93	IPR001005	SANT/Myb domain
Pfam	PF14379	6.7E-23	161	207	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MYHHQHRGKS IHSSERHMFL QGGGNGGGGD SGLVLSTDAK PRLKWTPDLH DRFVEAVNQL 60 GGADKATPKT VMKIMGIPGL TLYHLKSHLQ KYRLSKNLHG QANGGSGTNK TGMGWRVGTV 120 AVSVDQRLGE ANGAAAAAAA ARTNSIVVGP QPSSQSNKNL QISETIQMQI EVQKRLHEQL 180 EVQRHLQLRI ETQGKYLQTV LEKAQETLGR QNLGTVGLEA AKVQLSELVS KVSTQCLTAA 240 FPELHNQSQS QRVCAQQQSQ PPDCSMDSCL TSSEGGSKDQ QAAQQQQQQQ QVLLHNSHLA 300 LRPYADRASS GAPDHSLHGL SMSIGLVQGE KAGTEAYNGY STSEGQRLFG SKRTTKEAVL 360 EKETGFRYRM DLNNAGEDQL ISSNSNNDHT SSTTCKMFDL NGFS*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MYHHQHRGKS IHSSERHMFL QGGGNGGGGD SGLVLSTDAK PRLKWTPDLH DRFVEAVNQL  60
GGADKATPKT VMKIMGIPGL TLYHLKSHLQ KYRLSKNLHG QANGGSGTNK TGMGWRVGTV  120
AVSVDQRLGE ANGAAAAAAA ARTNSIVVGP QPSSQSNKNL QISETIQMQI EVQKRLHEQL  180
EVQRHLQLRI ETQGKYLQTV LEKAQETLGR QNLGTVGLEA AKVQLSELVS KVSTQCLTAA  240
FPELHNQSQS QRVCAQQQSQ PPDCSMDSCL TSSEGGSKDQ QAAQQQQQQQ QVLLHNSHLA  300
LRPYADRASS GAPDHSLHGL SMSIGLVQGE KAGTEAYNGY STSEGQRLFG SKRTTKEAVL  360
EKETGFRYRM DLNNAGEDQL ISSNSNNDHT SSTTCKMFDL NGFS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681839	0.0	LN681839.1 Cucumis melo genomic scaffold, anchoredscaffold00114.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008465330.1	0.0	PREDICTED: uncharacterized protein LOC103502977 isoform X1
Refseq	XP_008465331.1	0.0	PREDICTED: uncharacterized protein LOC103502977 isoform X1
TrEMBL	A0A0A0LG98	0.0	A0A0A0LG98_CUCSA; Uncharacterized protein
STRING	POPTR_0013s05670.1	1e-131	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-105	G2-like family protein